{"id":123,"date":"2021-04-08T12:39:44","date_gmt":"2021-04-08T12:39:44","guid":{"rendered":"https:\/\/www.jibsheet.net\/linux\/?p=123"},"modified":"2021-04-19T14:23:50","modified_gmt":"2021-04-19T14:23:50","slug":"graviton-getting-python-pandas-to-work","status":"publish","type":"post","link":"https:\/\/www.jibsheet.net\/linux\/index.php\/2021\/04\/08\/graviton-getting-python-pandas-to-work\/","title":{"rendered":"Graviton – getting python pandas to work"},"content":{"rendered":"

\"\"Procedure<\/h3>\n
    \n
  1. \u00a0I reviewed the packages available<\/li>\n<\/ol>\n

    – yum list – output of ‘yum list’<\/a><\/p>\n

    see numpy and scipy but no pandas – means we might have to compile.<\/p>\n

    2.\u00a0 \u00a0Install\u00a0 development packages<\/p>\n

    root@graviton~]# sudo yum install \"@Development tools\" python3-pip python3-devel blas-devel gcc-gfortran lapack-devel\r\n....\r\nInstalled:\r\n  autoconf.noarch 0:2.69-11.amzn2                     automake.noarch 0:1.13.4-3.1.amzn2                  bison.aarch64 0:3.0.4-6.amzn2.0.2\r\n  byacc.aarch64 0:1.9.20130304-3.amzn2.0.2            cscope.aarch64 0:15.8-10.amzn2.0.2                  ctags.aarch64 0:5.8-13.amzn2.0.2\r\n  diffstat.aarch64 0:1.57-4.amzn2.0.2                 doxygen.aarch64 1:1.8.5-4.amzn2                     elfutils.aarch64 0:0.176-2.amzn2\r\n  flex.aarch64 0:2.5.37-3.amzn2.0.3                   gcc-c++.aarch64 0:7.3.1-12.amzn2                    indent.aarch64 0:2.2.11-13.amzn2.0.2\r\n  intltool.noarch 0:0.50.2-7.amzn2                    lapack-devel.aarch64 0:3.4.2-8.amzn2.0.2            libtool.aarch64 0:2.4.2-22.2.amzn2.0.2\r\n  patch.aarch64 0:2.7.1-12.amzn2.0.2                  patchutils.aarch64 0:0.3.3-4.amzn2.0.1              rcs.aarch64 0:5.9.0-5.amzn2.0.2\r\n  rpm-build.aarch64 0:4.11.3-40.amzn2.0.5             rpm-sign.aarch64 0:4.11.3-40.amzn2.0.5              subversion.aarch64 0:1.7.14-16.amzn2.0.1\r\n  swig.aarch64 0:3.0.12-11.amzn2.0.3                  systemtap.aarch64 0:4.2-1.amzn2.0.1\r\n\r\nDependency Installed:\r\n  avahi-libs.aarch64 0:0.6.31-20.amzn2                 elfutils-libelf-devel.aarch64 0:0.176-2.amzn2       gdb.aarch64 0:8.0.1-30.amzn2.0.3\r\n  gettext-common-devel.noarch 0:0.19.8.1-3.amzn2       gettext-devel.aarch64 0:0.19.8.1-3.amzn2            gnutls.aarch64 0:3.3.29-9.amzn2\r\n  kernel-devel.aarch64 0:4.14.225-169.362.amzn2        libmodman.aarch64 0:2.0.1-8.amzn2.0.2               libproxy.aarch64 0:0.4.11-10.amzn2.0.3\r\n  m4.aarch64 0:1.4.16-10.amzn2.0.2                     neon.aarch64 0:0.30.0-3.amzn2.0.2                   pakchois.aarch64 0:0.4-10.amzn2.0.2\r\n  perl-Data-Dumper.aarch64 0:2.145-3.amzn2.0.2         perl-Test-Harness.noarch 0:3.28-3.amzn2             perl-Thread-Queue.noarch 0:3.02-2.amzn2\r\n  perl-XML-Parser.aarch64 0:2.41-10.amzn2.0.2          subversion-libs.aarch64 0:1.7.14-16.amzn2.0.1       systemtap-client.aarch64 0:4.2-1.amzn2.0.1\r\n  systemtap-devel.aarch64 0:4.2-1.amzn2.0.1            trousers.aarch64 0:0.3.14-2.amzn2.0.2               zlib-devel.aarch64 0:1.2.7-18.amzn2\r\n\r\nComplete!<\/pre>\n
    &<\/p>\n
    3.\u00a0 Install python-dev and upgrade pip<\/p>\n
    [ec2-user@graviton  ~]$ sudo yum install python3-devel.aarch64\r\nLoaded plugins: extras_suggestions, langpacks, priorities, update-motd\r\namzn2-core                                               | 3.7 kB     00:00\r\nResolving Dependencies\r\n--> Running transaction check\r\n---> Package python3-devel.aarch64 0:3.7.9-1.amzn2.0.2 will be installed\r\n--> Processing Dependency: system-rpm-config for package: python3-devel-3.7.9-1.amzn2.0.2.aarch64\r\n--> Processing Dependency: python3-rpm-macros for package: python3-devel-3.7.9-1.amzn2.0.2.aarch64\r\n--> Running transaction check\r\n---> Package python3-rpm-macros.noarch 0:3-23.amzn2 will be installed\r\n---> Package system-rpm-config.noarch 0:9.1.0-76.amzn2.0.10 will be installed\r\n--> Processing Dependency: dwz >= 0.4 for package: system-rpm-config-9.1.0-76.amzn2.0.10.noarch\r\n--> Processing Dependency: perl-srpm-macros for package: system-rpm-config-9.1.0-76.amzn2.0.10.noarch\r\n--> Running transaction check\r\n---> Package dwz.aarch64 0:0.11-3.amzn2.0.3 will be installed\r\n---> Package perl-srpm-macros.noarch 0:1-8.amzn2.0.1 will be installed\r\n--> Finished Dependency Resolution\r\n\r\nDependencies Resolved\r\n\r\n================================================================================\r\n Package               Arch       Version                   Repository     Size\r\n================================================================================\r\nInstalling:\r\n python3-devel         aarch64    3.7.9-1.amzn2.0.2         amzn2-core    243 k\r\nInstalling for dependencies:\r\n dwz                   aarch64    0.11-3.amzn2.0.3          amzn2-core     97 k\r\n perl-srpm-macros      noarch     1-8.amzn2.0.1             amzn2-core    4.7 k\r\n python3-rpm-macros    noarch     3-23.amzn2                amzn2-core    6.4 k\r\n system-rpm-config     noarch     9.1.0-76.amzn2.0.10       amzn2-core     80 k\r\n\r\nTransaction Summary\r\n================================================================================\r\nInstall  1 Package (+4 Dependent packages)\r\n\r\nTotal download size: 431 k\r\nInstalled size: 1.1 M\r\nIs this ok [y\/d\/N]: y\r\nDownloading packages:\r\n(1\/5): perl-srpm-macros-1-8.amzn2.0.1.noarch.rpm           | 4.7 kB   00:00\r\n(2\/5): dwz-0.11-3.amzn2.0.3.aarch64.rpm                    |  97 kB   00:00\r\n(3\/5): python3-devel-3.7.9-1.amzn2.0.2.aarch64.rpm         | 243 kB   00:00\r\n(4\/5): python3-rpm-macros-3-23.amzn2.noarch.rpm            | 6.4 kB   00:00\r\n(5\/5): system-rpm-config-9.1.0-76.amzn2.0.10.noarch.rpm    |  80 kB   00:00\r\n--------------------------------------------------------------------------------\r\nTotal                                              2.9 MB\/s | 431 kB  00:00\r\nRunning transaction check\r\nRunning transaction test\r\nTransaction test succeeded\r\nRunning transaction\r\n  Installing : python3-rpm-macros-3-23.amzn2.noarch                         1\/5\r\n  Installing : dwz-0.11-3.amzn2.0.3.aarch64                                 2\/5\r\n  Installing : perl-srpm-macros-1-8.amzn2.0.1.noarch                        3\/5\r\n  Installing : system-rpm-config-9.1.0-76.amzn2.0.10.noarch                 4\/5\r\n  Installing : python3-devel-3.7.9-1.amzn2.0.2.aarch64                      5\/5\r\n  Verifying  : python3-devel-3.7.9-1.amzn2.0.2.aarch64                      1\/5\r\n  Verifying  : perl-srpm-macros-1-8.amzn2.0.1.noarch                        2\/5\r\n  Verifying  : dwz-0.11-3.amzn2.0.3.aarch64                                 3\/5\r\n  Verifying  : system-rpm-config-9.1.0-76.amzn2.0.10.noarch                 4\/5\r\n  Verifying  : python3-rpm-macros-3-23.amzn2.noarch                         5\/5\r\n\r\nInstalled:\r\n  python3-devel.aarch64 0:3.7.9-1.amzn2.0.2\r\n\r\nDependency Installed:\r\n  dwz.aarch64 0:0.11-3.amzn2.0.3\r\n  perl-srpm-macros.noarch 0:1-8.amzn2.0.1\r\n  python3-rpm-macros.noarch 0:3-23.amzn2\r\n  system-rpm-config.noarch 0:9.1.0-76.amzn2.0.10\r\n\r\nComplete!\r\n\r\n<\/pre>\n
    — upgrade pip<\/p>\n
    [ec2-user@graviton  ~]$  python -m pip install --upgrade pip\r\n\r\n[ec2-user@graviton ~]$ pip list | grep pip\r\npip                 21.0.1\r\n[ec2-user@gravioton ~]$ pip list | grep setuptools\r\nsetuptools          54.2.0\r\n\r\n<\/pre>\n
    — install cython, numpy and scipy<\/p>\n
    [ec2-user@graviton ~]$ pip install Cython\r\n\r\n\r\n[ec2-user@graviton ~]$ pip install numpy\r\n\r\n[ec2-user@graviton ~]$ pip install scipy.\r\n\r\n<\/pre>\n
    Now onto installing pandas – WARNING – can take 20 minutes. It has to compile for ARM64<\/p>\n
    [ec2-user@graviton ~]$ pip install pandas\r\nCollecting pandas\r\n  Using cached pandas-1.2.3.tar.gz (5.5 MB)\r\n  Installing build dependencies ... done\r\n  Getting requirements to build wheel ... done\r\n    Preparing wheel metadata ... done\r\nRequirement already satisfied: pytz>=2017.3 in \/usr\/local\/lib\/python3.7\/site-packages (from pandas) (2021.1)\r\nRequirement already satisfied: python-dateutil>=2.7.3 in \/usr\/local\/lib\/python3.7\/site-packages (from pandas) (2.8.1)\r\nRequirement already satisfied: numpy>=1.16.5 in \/usr\/local\/lib64\/python3.7\/site-packages (from pandas) (1.20.2)\r\nRequirement already satisfied: six>=1.5 in \/usr\/local\/lib\/python3.7\/site-packages (from python-dateutil>=2.7.3->pandas) (1.15.0)\r\nBuilding wheels for collected packages: pandas\r\n  Building wheel for pandas (PEP 517) ... \/^canceled\r\nERROR: Operation cancelled by user\r\n[root@ip-172-31-44-107 ~]# pip --version\r\npip 21.0.1 from \/usr\/local\/lib\/python3.7\/site-packages\/pip (python 3.7)\r\n[root@ip-172-31-44-107 ~]# pip install pandas\r\nCollecting pandas\r\n  Using cached pandas-1.2.3.tar.gz (5.5 MB)\r\n  Installing build dependencies ... done\r\n  Getting requirements to build wheel ... done\r\n    Preparing wheel metadata ... done\r\nRequirement already satisfied: python-dateutil>=2.7.3 in \/usr\/local\/lib\/python3.7\/site-packages (from pandas) (2.8.1)\r\nRequirement already satisfied: numpy>=1.16.5 in \/usr\/local\/lib64\/python3.7\/site-packages (from pandas) (1.20.2)\r\nRequirement already satisfied: pytz>=2017.3 in \/usr\/local\/lib\/python3.7\/site-packages (from pandas) (2021.1)\r\nRequirement already satisfied: six>=1.5 in \/usr\/local\/lib\/python3.7\/site-packages (from python-dateutil>=2.7.3->pandas) (1.15.0)\r\nBuilding wheels for collected packages: pandas\r\n  Building wheel for pandas (PEP 517) ... done\r\n  Created wheel for pandas: filename=pandas-1.2.3-cp37-cp37m-linux_aarch64.whl size=28004862 sha256=f9d9cd1474926b35f2c290f96c234b5236dbfe52e2a41b5b932bbad4267be746\r\n  Stored in directory: \/root\/.cache\/pip\/wheels\/ac\/43\/a6\/2e727abb256109d77a5c88776edf4b52a778178082c7a779b1\r\nSuccessfully built pandas\r\nInstalling collected packages: pandas\r\nSuccessfully installed pandas-1.2.3\r\n[ec2-user@graviton ~]$\r\n\r\n\r\n<\/pre>\n
    Want to run Jupyther Notebook<\/p>\n
    [ec2-user@graviton ~]$ pip install jupyter\r\n\r\n<\/pre>\n
    Then start jupyter – jupyter notebook –port 8884<\/p>\n","protected":false},"excerpt":{"rendered":"
    Procedure \u00a0I reviewed the packages available – yum list – output of ‘yum list’ see numpy and scipy but no pandas – means we might have to compile. 2.\u00a0 \u00a0Install\u00a0 development packages root@graviton~]# sudo yum install “@Development tools” python3-pip python3-devel blas-devel gcc-gfortran lapack-devel …. Installed: autoconf.noarch 0:2.69-11.amzn2 automake.noarch 0:1.13.4-3.1.amzn2 bison.aarch64 0:3.0.4-6.amzn2.0.2 byacc.aarch64 0:1.9.20130304-3.amzn2.0.2 cscope.aarch64 0:15.8-10.amzn2.0.2 ctags.aarch64 0:5.8-13.amzn2.0.2 diffstat.aarch64 0:1.57-4.amzn2.0.2 doxygen.aarch64 […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_jetpack_memberships_contains_paid_content":false,"footnotes":""},"categories":[8,13,7],"tags":[],"yoast_head":"\nGraviton - getting python pandas to work - Jon Allen's Linux Stuff<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.jibsheet.net\/linux\/index.php\/2021\/04\/08\/graviton-getting-python-pandas-to-work\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Graviton - getting python pandas to work - Jon Allen's Linux Stuff\" \/>\n<meta property=\"og:description\" content=\"Procedure \u00a0I reviewed the packages available – yum list – output of ‘yum list’ see numpy and scipy but no pandas – means we might have to compile. 2.\u00a0 \u00a0Install\u00a0 development packages root@graviton~]# sudo yum install "@Development tools" python3-pip python3-devel blas-devel gcc-gfortran lapack-devel .... Installed: autoconf.noarch 0:2.69-11.amzn2 automake.noarch 0:1.13.4-3.1.amzn2 bison.aarch64 0:3.0.4-6.amzn2.0.2 byacc.aarch64 0:1.9.20130304-3.amzn2.0.2 cscope.aarch64 0:15.8-10.amzn2.0.2 ctags.aarch64 0:5.8-13.amzn2.0.2 diffstat.aarch64 0:1.57-4.amzn2.0.2 doxygen.aarch64 […]\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.jibsheet.net\/linux\/index.php\/2021\/04\/08\/graviton-getting-python-pandas-to-work\/\" \/>\n<meta property=\"og:site_name\" content=\"Jon Allen's Linux Stuff\" \/>\n<meta property=\"article:published_time\" content=\"2021-04-08T12:39:44+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2021-04-19T14:23:50+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/www.jibsheet.net\/linux\/wp-content\/uploads\/2021\/04\/graviton_jupyter.png\" \/>\n<meta name=\"author\" content=\"jonallen\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"jonallen\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"4 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"TechArticle\",\"@id\":\"https:\/\/www.jibsheet.net\/linux\/index.php\/2021\/04\/08\/graviton-getting-python-pandas-to-work\/#article\",\"isPartOf\":{\"@id\":\"https:\/\/www.jibsheet.net\/linux\/index.php\/2021\/04\/08\/graviton-getting-python-pandas-to-work\/\"},\"author\":{\"name\":\"jonallen\",\"@id\":\"https:\/\/www.jibsheet.net\/linux\/#\/schema\/person\/295a80d0b2aa929b648c4fdddee83993\"},\"headline\":\"Graviton – getting python pandas to work\",\"datePublished\":\"2021-04-08T12:39:44+00:00\",\"dateModified\":\"2021-04-19T14:23:50+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\/\/www.jibsheet.net\/linux\/index.php\/2021\/04\/08\/graviton-getting-python-pandas-to-work\/\"},\"wordCount\":81,\"commentCount\":1,\"publisher\":{\"@id\":\"https:\/\/www.jibsheet.net\/linux\/#\/schema\/person\/295a80d0b2aa929b648c4fdddee83993\"},\"image\":{\"@id\":\"https:\/\/www.jibsheet.net\/linux\/index.php\/2021\/04\/08\/graviton-getting-python-pandas-to-work\/#primaryimage\"},\"thumbnailUrl\":\"https:\/\/www.jibsheet.net\/linux\/wp-content\/uploads\/2021\/04\/graviton_jupyter.png\",\"articleSection\":[\"AWS\",\"Jupyter Notebooks\",\"Python\"],\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"CommentAction\",\"name\":\"Comment\",\"target\":[\"https:\/\/www.jibsheet.net\/linux\/index.php\/2021\/04\/08\/graviton-getting-python-pandas-to-work\/#respond\"]}]},{\"@type\":\"WebPage\",\"@id\":\"https:\/\/www.jibsheet.net\/linux\/index.php\/2021\/04\/08\/graviton-getting-python-pandas-to-work\/\",\"url\":\"https:\/\/www.jibsheet.net\/linux\/index.php\/2021\/04\/08\/graviton-getting-python-pandas-to-work\/\",\"name\":\"Graviton - 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